Creating a Script that will automatically run with different inputs
by tash07 from LinuxQuestions.org on (#6GH0Y)
Hi,
I'm very new to using Linux and coding in general and I'm currently using it for bioinformatics.
I have a dataset that contains multiple genome reads and contigs that I'm mapping to a reference genome sequence. This I am managing okay and I have created a script that has ran the whole mapping process for one of the genome reads. I was wondering if there is a way to set this script up so that it will run through all the genome reads and contigs, without me having to manually change the input files on the script each time.
TIA
I'm very new to using Linux and coding in general and I'm currently using it for bioinformatics.
I have a dataset that contains multiple genome reads and contigs that I'm mapping to a reference genome sequence. This I am managing okay and I have created a script that has ran the whole mapping process for one of the genome reads. I was wondering if there is a way to set this script up so that it will run through all the genome reads and contigs, without me having to manually change the input files on the script each time.
TIA