Video: Profiling Genome Pipeline I/O with DDN and the Sanger Institute
by Rich Brueckner from High-Performance Computing News Analysis | insideHPC on (#1MEC3)
"The data that I presented from the Sanger Institute is typical of the profiles that we come across: a mix of good streaming IO (ie the larger reads), but unexpectedly high numbers of small reads and writes. These small reads and writes are potentially harmful to the file system. We've profiled HPC applications in various different life sciences organizations, not just the Sanger Institute, and we've found these IO patterns throughout. We've also seen similar IO patterns in EDA and oil and gas applications."
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