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The Tasmanian government is scaling down its operation at the site where hundreds of whales were stranded on the state's west coast.

In a statement last night, the Department of Natural Resources and Environment said its staff will continue to monitor a small number of whales" in Macquarie Harbour following the mass stranding this week.

Through extensive aerial and vessel surveillance of Macquarie Harbour we have identified a small number of whales within the harbour precinct.

A number of those are still free swimming. However, we do have a couple that are stranded in shallower waters. We currently have crews responding to those animals and we aim to free them and get them swimming out of the harbour throughout the course of the afternoon.

Given the current flooding, saturated catchments and full dams, this forecast front will likely exacerbate the current riverine flooding with multiple systems anticipated to see prolonged or renewed minor to major flooding.

With catchments wet and many dams at capacity, waterways are very sensitive to rainfall, and further river rises and renewed flooding are likely for the inland catchments.