John D. Cook

Hadley Wickham posted a photo on Twitter back in September illustrating R list indices with pepper: Then a few days ago, Jenny Bryan posted on Twitter her follow up, an analogous photo for XML: Related post: R without Hadley Wickham

There are several ways to associate a matrix with a graph. The properties of these matrices, especially spectral properties (eigenvalues and eigenvectors) tell us things about the structure of the corresponding graph. This post is a brief reference for keeping these various matrices straight. The most basic matrix associated with a graph is its adjacency […]

This weekend I mentioned on Twitter that it’s spooky how well dimensional analysis catches errors. If you’re trying to calculate a number of horses, does your final result have units of horses? If it has units of cats or kilograms, something has gone wrong. This is such a simple idea, it’s remarkable that it’s worth checking. […]

Richard Feynman tells a story in Surely You’re Joking, Mr. Feynman that I’m reminded of periodically when I realize something is smaller and less sophisticated than I imagined. [Update: A couple people pointed out in the comments that I got the roles of the two characters in this story reversed, so I’ve corrected this.] Feynman tells the story of […]

A few years ago, a friend told me he was thinking about learning a certain technology because it was really hard to use. This was not something that had to be complex to solve a complex problem, but something that was unnecessarily complex. Why would anyone do that? His reasoning was that as a consultant, […]

Suppose you have data from a discrete power law with exponent α. That is, the probability of an outcome n is proportional to n-α. How can you recover α? A naive approach would be to gloss over the fact that you have discrete data and use the MLE (maximum likelihood estimator) for continuous data. That […]

Here are wordclouds for some of my most popular Twitter accounts. Thanks to Mike Croucher for creating these images. He explains on his blog how to create your own Twitter wordclouds using R. My most popular account is CompSciFact, tweets about computer science and related topics. AlgebraFact is for algebra, number theory, and miscellaneous pure […]

David Mumford wrote a blog post a few weeks ago in which he identified four tribes of mathematicians. Here’s a summary of his description of the four tribes. Explorers are people who ask — are there objects with such and such properties and if so, how many? … Alchemists … are those whose greatest excitement comes from […]

Today I needed to the derivative of the zeta function. SciPy implements the zeta function, but not its derivative, so I needed to write my own version. The most obvious way to approximate a derivative would be to simply stick a small step size into the definition of derivative: f’(x) ≈ (f(x+h) – f(x)) / […]

“Ever since Euclid, mathematical proofs have served a dual purpose: certifying that a statement is true and explaining why it is true. In the future these two epistemological functions may be divorced. In the future, the computer assistant may take care of the certification and leave the mathematician to look for an explanation that humans […]

Anthony Scopatz did an interview for Podcast.__init__ recently talking about xonsh, a command shell that blends Python and some traditions from bash. One line from the interview jumped out at me: … thinking very critically about what shells get used for and what they’re actually good at and what they’re not good at. I’ve wondered about […]

Hilary Mason made an important observation on Twitter a few days ago: You do not want to be an edge case in this future we are building. Systems run by algorithms can be more efficient on average, but make life harder on the edge cases, people who are exceptions to the system developers’ expectations. Algorithms, whether encoded in software or […]

Large companies take longer to start projects. How much longer? A plausible guess is that project lead time would be proportional to the logarithm of the company size. If a company with n employees has a hierarchy with every manager having m subordinates, the number of management layers would be around logm(n). If every project has […]

Four years ago I wrote about the wildfires in Bastrop, Texas. Here’s a photo from the time by Kerri West, used by permission. Today I visited Bastrop State Park on the way home from Austin. Some trees, particularly oaks, survived the fires. Pines have come back on their own in parts of the park. A volunteer working […]

A medical device company approached me with the following problem. Scientists had written academic journal articles about their product, but the sales force couldn’t understand what they said. My task was to read the articles, then tell the people in sales what the articles were saying in laymen’s terms. One of the questions that came […]

The article Deming, data and observational studies by S. Stanley Young and Alan Karr opens with Any claim coming from an observational study is most likely to be wrong. They back up this assertion with data about observational studies later contradicted by prospective studies. Much has been said lately about the assertion that most published results are false, particularly […]

It’s hard to transfer intellectual property. When I was managing software projects, it would take months to fully transfer a project from one person to another. This was with full access to and encouragement from the original developer. This was a transfer between peers, both part of the same environment with all its institutional memory. […]

The Insight 2015 conference highlighted some impressive applications of big data: predicting the path of hurricanes more accurately (as we saw with hurricane Patricia), improving the performance of athletes, making cars safer, etc. These applications involve large amounts of data. But more importantly they involve new data, not simply greater quantities of data we’ve had before. […]

A/B testing, or split testing, is commonly used in web marketing to decide which of two design options performs better. If you have so many visitors to a site that the number of visitors used in a test is negligible, conventional randomization schemes are the way to go. They’re simple and effective. But if you […]

A few weeks ago I got a message on Twitter saying that IBM’s Watson had identified me as an “influencer” and invited me to the company’s Insight 2015 conference. So that’s where I am this week. I had a brief interview last night. Someone took this photo as we were setting up.

The distance between the Earth and Mars depends on their relative positions in their orbits and varies quite a bit over time. This post will show how to compute the approximate distance over time. We’re primarily interested in Earth and Mars, though this shows how to calculate the distance between any two planets. The planets […]

You may expect that a burst of input will cause a burst of output. Sometimes that’s the case, but often a burst of input results in a long, smoothly decreasing succession of output. You may not get immediate results, but long-term results. This is true of life in general, but it’s also true in a precise sense of differential equations. […]

Suppose a test asks you to place 10 events in chronological order. Label these events A through J so that chronological order is also alphabetical order. If a student answers BACDEFGHIJ, then did they make two mistakes or just one? Two events are in the wrong position, but they made one transposition error. The simplest way […]

Electric lighting has changed the way we sleep, encouraging us to lose sleep by staying awake much longer after dark than we otherwise would. Or maybe not. A new study of three contemporary hunter-gatherer tribes found that they stay awake long after dark and sleep an average of 6.5 hours a night. They also don’t nap […]

Here’s an unusual formula for pi based on the product and least common multiple of the first m Fibonacci numbers. Unlike the formula I wrote about a few days ago relating Fibonacci numbers and pi, this one is not as simple to prove. The numerator inside the root is easy enough to estimate asymptotically, […]

Energy efficiency improvements can pay for themselves in the long run. Financing can make the improvements immediately cash-flow positive, but only if the loan tenor can match the useful life of the equipment. This enables the payments to be low enough that the projected energy savings exceeds the payments. PACE, which stands for Property Assessed Clean Energy, is […]

I help people make decisions in the face of uncertainty. Sounds interesting. I’m a data scientist. Not sure what that means, but it sounds cool. I study machine learning. Hmm. Maybe interesting, maybe a little ominous. I’m into big data. Exciting or passé, depending on how many times you’ve heard the term. Even though each […]

Here’s an unusual formula for π. Let Fn be the nth Fibonacci number. Then As mysterious as this equation may seem, it’s not hard to prove. The arctangent identity shows that the sum telescopes, leaving only the first term, arctan(1) = π/4. To prove the arctangent identity, take the tangent of both sides, use the addition law for tangents, and […]

When I was growing up, I was told that you could never become fluent in a second language, and I believed it. I had no reason not to. I didn’t know anybody who had become fluent at a second language, and I could think of plenty of people who had learned English as a second […]

The other day I ran across the fact that 23! has 23 digits. That made me wonder how often n! has n digits. There can only be a finite number of cases, because n! grows faster than 10n for n > 10, and it’s reasonable to guess that 23 might be the largest case. Turns out it’s […]

John Tukey preferred the term “data analysis” over “statistics.” In his paper Data Anaysis, Computation and Mathematics, he explains why. My title speaks of “data analysis” not “statistics”, and of “computation” not “computing science”; it does not speak of “mathematics”, but only last. Why? … My brother-in-squared-law, Francis J. Anscombe has commented on my use of […]

There are huge opportunities to take technology that is well-known and undervalued in one context and apply it in another where it is unknown but valuable. You could call this technical arbitrage, analogous to financial arbitrage, taking advantage of the price difference of something in two markets. As with financial arbitrage, the hard part is […]

In the novel Enchantment, the main character, Ivan, gives a bitter assessment of his choice of an academic career, saying it was for “men who hadn’t yet grown up.” The life he had chosen was a cocoon. Surrounded by a web of old manuscripts and scholarly papers, he would achieve tenure, publish frequently, teach a group of […]

A function f is periodic if there exists a constant period ω such that f(x) = f(x + ω) for all x. For example, sine and cosine are periodic with period 2π. There’s only one way a function on the real line can be periodic. But if you think of functions of a complex variable, […]

This is a post about letting go of something you think you need. It starts with an illustration from programming, but it’s not about programming. Bob Martin published a dialog yesterday about the origin of structured programming, the idea that programs should not be written with goto statements but should use less powerful, more specialized […]

One of my clients is writing software in Julia so I’m picking up the language. I looked at Julia briefly when it first came out but haven’t used it for work. My memory of the language was that it was almost a dialect of Python. Now that I’m looking at it a little closer, I […]

This is reprint of Nick Higham’s post of the same title from the Princeton University Press blog, used with permission. Color is a fascinating subject. Important early contributions to our understanding of it came from physicists and mathematicians such as Newton, Young, Grassmann, Maxwell, and Helmholtz. Today, the science of color measurement and description is […]

It would be hard to think of two programming languages more dissimilar than Haskell and R. Haskell was designed to enforce programming discipline; R was designed for interactive use. Haskell emphasizes correctness; R emphasizes convenience. Haskell emphasizes computer efficiency; R emphasizes interactive user efficiency. Haskell was written to be a proving ground for programming language theorists. R was written to be […]

The most direct way to compute a Fourier transform numerically takes O(n2) operations. The Fast Fourier Transform (FFT) can compute the same result in O(n log n) operations. If n is large, this can be a huge improvement. James Cooley and John Tukey (re)discovered the FFT in 1965. It was thought to be an original discovery […]

Each Fibonacci number is the sum of its two predecessors. My previous post looked at generalizing this to the so-called Tribonacci numbers, each being the sum of its three predecessors. One could keep going, defining the Tetrabonacci numbers and in general the n-Fibonacci numbers for any n at least 2. For the definition to be complete, […]

Take an n × n matrix A and a vector x of length n. Now multiply x by A, then multiply the result by A, over and over again. The sequence of vectors generated by this process will converge to an eigenvector of A. (An eigenvector is a vector whose direction is unchanged when multiplied […]

I got a call this afternoon from someone who records audio books for the blind. He wanted to know the name of a symbol he didn’t recognize. He then asked me if the equation was real. Here’s the equation in context, from the book Michael Vey 4: Hunt for Jade Dragon. The context is as follows. Suddenly math […]

Yesterday on Twitter I said I was thinking about writing the names of each of my clients and leads on balls so I could literally juggle them. I was only half joking. I didn’t write my clients and leads on balls, but I did write them on index cards. And it helped a great deal. It’s […]

A while back I wrote about a method to test whether a number is divisible by seven. I recently ran across another method for testing divisibility by 7 in Martin Gardner’s book The Unexpected Hanging and Other Mathematical Diversions. The method doesn’t save too much effort compared to simply dividing by 7, but it’s interesting. It looks […]

The previous post stated a formula for f(n), the nth square triangular number (i.e. the nth triangular number that is also a square number): ((17 + 12√2)n + (17 – 12√2)n – 2)/32 Now 17 – 12√2 is 0.029… and so the term (17 – 12√2)n approaches zero very quickly as n increases. So the f(n) […]

Of course a triangle cannot be a square, but a triangular number can be a square number. A triangular number is the sum of the first so many positive integers. For example, 10 is a triangular number because it equals 1+2+3+4. These numbers are called triangle numbers because you can form a triangle by having a row of […]

In the preface to his book Strength of Materials, J. P. Den Hartog says After the alphabet and the tables of multiplication, nothing has proved quite so useful in my professional life as these six little expressions. The six expressions he refers to are nicknamed the vergeet-me-nietjes in Dutch, which translates to forget-me-nots in English. They are also known […]

You’ve probably heard someone ask someone else what books they would take to a deserted island. It’s usually implied that you’re bringing books for pleasure, not books that would help you survive on the island or leave it. People often answer the question with a list of their favorite books, perhaps skewed in favor of long […]

This afternoon I helped someone debug a financial spreadsheet. One of the reasons spreadsheets can be so frustrating to work with is that assumptions are hard to see. You have to click on cells one at a time to find formulas, then decode cell coordinates into their meanings. The root problem turned out to be […]

Earlier this week I had a chance to talk with Anthony Scopatz and Katy Huff about their new book, Effective Computation in Physics. JC: Thanks for giving me a copy of the book when we were at SciPy 2015. It’s a nice book. It’s about a lot more than computational physics. KH: Right. If you think of […]